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- Identification of dominant signaling pathways from proteomics expression data.
Zubarev RA*, Nielsen ML*, Fung EM*, Savitski MM*<//a>, Kel-Margoulis O, Wingender E, Kel A.
*Division of Molecular Biometry, Institute for Cell and Molecular Biology, Uppsala University, SE-75 124 Uppsala, Sweden.
[PubMed Link]
- Predicting
signaling networks upon inflammation caused by PAR-1/ F2R activation:
application of the ExPlain™ Analysis Platform.
Dinesh Madhyastha, Neetu Tandon, Mangala Sathyamurthy, Tatiana Konovalova, Volker Matys, Olga Kel-Margoulis, Alexander Kel
[PDF, ~700K] - Presented at HUGO India 2008
- Analysis of HER2/neu as a diagnostic bomarker using ExPlain™ to examine signaling pathways and transcription factors.
Michael N. Liebman*, Brenda Deyarmin*, Craig D. Shriver*, Philip Stegmaier, Holger Karas, Alexander Kel and Edgar Wingender
*Non-BIOBASE Personnel
[Abstract] [PDF 265K] - Presented at ISMB Vienna 2007
- ExPlain™: Finding molecular mechanism of disease from promoter models to signaling pathways.
Alexander
Kel, Nico Voss, Tanyana Konovalova, Philip Stegmaier, Olga
Kel-Margoulis, Tagir Waleev*, Gerd Schmitz*, Edgar Wingender
*Non-BIOBASE personnel
[Abstract] [PDF 792K] - Presented at ISMB Vienna 2007
- Regulatory modeling of epidermal growth factor-induced carcinogenicity
Philip Stegmaier, Alexander Kel, Edgar Wingender, and Juergen Borlak*
*Non-BIOBASE personnel
[Abstract] [PDF 253K] - Presented at ISMB Vienna 2007
- A bioinformatics approach to analyze intracellular events upon treatment of cancer cells with a chemotherapeutic drug.
Dinesh Madhyastha, Jesintha Maniraja, Raghavendra Prasad, Olga Kel-Margoulis, and Alexander Kel.
[Abstract] [PDF] - Presented at Bangalore BIO 2007
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- Beyond microarrays: Find key transcription factors controlling signal transduction pathways
Kel, A., Voss, N., Jauregui, R., Kel-Margoulis, O. and Wingender, E.
BMC Bioinformatics, 7(Suppl. 2), S13 (2006). [more]
- Composite Module Analyst: A fitness-based tool for identification of transcription factor binding site combinations
Kel, A., Konovalova, T., Valeev, T., Cheremushkin, E., Kel-Margoulis, O., Wingender, E.
Bioinformatics 2006 May 15;22(10):1190-7. Epub 2006 Feb 10. [more]
- Composite Module Analyst: A Fitness-Based Tool for Prediction of Transcription Regulation
Kel, A., Konovalova, T., Valeev, T., Cheremushkin, E., Kel-Margoulis, O., Wingender, E.
In: Proceedings of German Conference on
Bioinformatics 2005 GCB 2005 October 5-7, 2005, Hamburg, Germany.
Lecture Notes in Informatics (LNI) - Proceedings Series of the
Gesellschaft für Informatik (GI) Volume P-71 (Andrew Torda, Stefan
Kurtz, Matthias Rarey eds.), 63-76 (2005).
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